Scaffold Ga0070744_10000298

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10000298
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14100
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (81.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005589	Metagenome	395	Y
F021538	Metagenome	218	Y
F040107	Metagenome	162	N
F060919	Metagenome / Metatranscriptome	132	N
F090404	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_1000029814	F040107	GGAG	MTGIEALSLLKDGKTLRRESWEPHEKCKALDFFGQWIVHLIKEHDDEKLDKELESIFQNSFTFTKTTFDDFFGLFDTIDAGDFLHDDWEIVE*
Ga0070744_1000029815	F090404	GGA	MKFADVIASLMAGKRVRKTNWESTTAFFLFDNEDNTFVFYEVLDGKECRIQIYTELMLSPKDLISDFWEIIE*
Ga0070744_1000029819	F060919	GGA	MTGREALDKLQAGFTLRREAWEPDEKCKAYFSDDLWSIRVECDSISPAPEHVPDDPKFAEYMSIFDAIDAGEFLMDDWEIVE*
Ga0070744_1000029825	F021538	GAGG	LETTIINCDCLCHSLHVRPDKDTKTVDISLWNYGFNNGKLNWKKRLKILIDGYAYSDLVVLNKEELDKLIHALQEAKENI*
Ga0070744_1000029827	F005589	AGG	MAKFKHSFWRYVPSTEKYKSEFKFVESFETDSDAVPEFHDHYCIDHVVDLETEQMRVKNHSAPEYCVSKYVGWGLELPPVEKTTDKEIYVVIHRSSFSHKKIEFDEFIEPANHRYSQEDWEFLLSILEQRFTKQKEWAKEGIRVPSQYEDGTQVFKTENEFRAFSFGRRAYFLYHLVYNYNFRLLIRKLNIAYTS*