Scaffold Ga0070744_10000277

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10000277
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14420
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (82.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016273	Metagenome / Metatranscriptome	248	Y
F018369	Metagenome	235	Y
F046382	Metagenome	151	Y
F058152	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_1000027714	F058152	GAG	MKDYSESLIKLKAMIHQYQKLVLQGKYDAAADVAVDMQIVLVDLQEWTEAQVDQSAT*
Ga0070744_1000027721	F046382	AGGAGG	MNKRNWPFLTDLGDPNWTGRTTRTMRNQTRYTQADERIPPIAWVVGLLMLALVFGFFPLLSLMML*
Ga0070744_1000027722	F018369	AGG	MKHSYIQLTDEGKRQLMRELSLELTDKKIAELMDQFADGVKLDSNGEPYIKIDRDDVLMCAVPMYTHFIDINHIETVTANEEDGSDE*
Ga0070744_1000027725	F016273	N/A	MSQSEEAILISWRLQQWYEGMVLDARAMQDLQDAIEMLKTLAKQVQK*