Scaffold Ga0070744_10000141

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10000141
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18467
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (21.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062767	Metagenome	130	N
F067748	Metagenome	125	N
F072351	Metagenome / Metatranscriptome	121	N
F082706	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_1000014115	F067748	N/A	MNCLQNYIGLQGCTSTAPLSGLYINDYPGMSSELLEKIATPEQASYVGMWNSAQAVSYQRIKRDIQLALFESAEAQLDQVLFQTSKNFVQQWQQIQTVAPEAILKGAFVSIQGSKYLSLRIKQLFVYNAGSTTVTACPWFIYQTQDGKVLDQGTYDLAPGMNYIPINNEFYSDFDKINIMAAVDCTNLETTTGMFVDWGWNQMDLECATRFTYLWRNGWSIFPVTAPLGYGFGDSWSQDNSQSGVYMDAQLLCSLDSFICQQKEFLVDAWANLLCYQILWAKVASPRANYFSQGNREFTERAMATFLEGYQQSLAIWARQLNLRGEGLCFNCDNAGLIQQGFVRP*
Ga0070744_1000014128	F062767	GAG	MTLTKVTVQSALAELCSNFAGSYPYEMLNYGEAVESIIENQAGNYVTKDGATYCAVNDTYKLVLFLVRESASVEQQPAGGRANSLLRTVRIKLVANTTLESAEFALTSIINRTKGITYEATDYDSKAIARQYFGLEERNFETAFFTIDISITERINCEVTC*
Ga0070744_1000014132	F072351	N/A	MSLSTANVCPAILTSLSDNLINNPANVQIMGGTLAALTDPSNLRAGQIIRQANDNGTGHSKEVRVVYKQRQLASDAVDTKSCEAGPQMNYIEETLQINNFKQVSFTLSEAQLRTFCDSYSQLVSLTGSSSPGQIAERANGIGAAQGALSVVREMFVDIQLSANALVQAINIDLLGQIQTAAGNWYGGTANPSYTVEGADGSIYAAGLFNMKQNYMNTGFNGAPIIIGGAGALQRVWMNDSRYFGQGANGINFSTVRDNTGLAEFYFDSNANTILGDEDSAIVFAPGSIVYTPFLEYVGNFGNIGTMTRFTMPLPGLERVSIDARILPSECEESYSFFMQHYYDTYSPGTDMFPAGDANAGVNGVFTADFVTAVAP*
Ga0070744_100001415	F082706	N/A	MEELIGQLFSTLMDRQIREGKLEYIECAREKAEELEYHFENEYPTKLLHTQHPSEEPWMKDYRRQRWQAPTTTATGRVFNFLQKIQQADDFKITFESDYQKTGVAERIGLQDNTLQFYVENNLPKFGSLETWAFNVFLKTYLQDANAIVAVLPNYDEFIKNPAGVTTLDWLKPYPQTIESEYLIFEEETFIIIKVDDYEDMNRKKWDQFLCITMEGLVLFRQVNQYTYDNPFQVFILPYTFTYLPVVKVGSVIYEEEDGHLVFDSVLAPCLPAWNEVLFRTDDLNILWATHALPQKWALKMSPCKTCNGTGQRTNRKEERVGCNDCQGSGRASSSPFGLMEINIDRVSAVNPNPLVPPVPPAGYIERPTETVRLFQEDIIQKEFQGFKAIGLELLGQIPAAQSGIAKEYDRKELNTFCYSVTVHLAQVYNKVCFHIIYQRYNSLFASSLMDSDKVKAALPQITVPTDFDVMTTDMIGEMLTKARQGNFDPLIISGIEDDYVEKLYGENSIQQIYLKILKQLDPLPYKTIDEKTLLLNSQGCTAQDYVLSANLPAFVMQLVDNDATWYDKPVQIQRADVYALAMAKQMEIKSGIVPLMDDSDASTPAMEADNLGKLPLAIQQLSLAAERANKSGNAKLFKVLNDKINNLISEIG*