Scaffold Ga0070744_10000083

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10000083
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22610
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (79.63%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F000868	Metagenome / Metatranscriptome	853	Y
F003422	Metagenome / Metatranscriptome	487	Y
F007921	Metagenome / Metatranscriptome	342	Y
F021988	Metagenome / Metatranscriptome	216	Y
F073565	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_1000008313	F000868	AGGTGG	MSFLENENEMVIDMTYSEIGAMLVEDWVNANLDEGQLYADFRFAEMSDSNYLKGRFNLFYDLNPGDQYYLEWNEEL*
Ga0070744_1000008316	F000263	AGG	MTISDDMFTDKESLELPPHLQRMVDAGVTGLDIMHGELKNLMLIAEQELADAIAREEETEEAMDSMDRTNAEGRLDMLVELYQLTYQLSFAIGARNEA*
Ga0070744_1000008318	F000441	AGGAGG	MRMSDNYINDQLNKAQKLLWGGSETENIEAHNIISKLIKDRVEQTDQI*
Ga0070744_1000008319	F000852	GGA	MTTKREYLKQQGITVGVRGRFSGAAKVALAEAAAKGVTFTAEAPVKKAK*
Ga0070744_1000008331	F007921	GAGG	MIDWLVNRIFRWDTLRHAVFDEVMLYQSVDRSIWEHSKYGPMNLTWSEGDTWYGWTYNESNKKYYFDDIGNTSLMGLWEDQWMREAEGLEDTRV*
Ga0070744_1000008348	F021988	AGG	MSDFKKEDGTGTTPPPNGAAAGAVTSSSATRKQPRQGLKTDINRHGIRRELNTTPRPPKKTGRKKI*
Ga0070744_100000835	F003422	N/A	MPAKVRGQILCYGSHKKSPEIYRQLSVGPGTILFMTNELVSSKYTFVCDPDECDCLIELTSSDGFGFPSGVTELTCPCGRKTTLVSVEHATIAPSTQTKEEPMEESTVTTTPIPESYNSNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNGRQSQKRVTTLLSQIDTVRDIITEAYADSDDQETLRSIAEALDIALTRDVEWSATIEVSGTIQLDLLADSDTDVEQEIYDNLYVDSQNGNIEIVDTEVCNVREN*
Ga0070744_1000008350	F073565	AGGAG	MSDGINLTGFNEVKPAVQHTIGEQYAADPAGAFASTDKSTQDGSGVGQGGK*