NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0100229_1437680

Scaffold Ga0100229_1437680


Overview

Basic Information
Taxon OID3300006481 Open in IMG/M
Scaffold IDGa0100229_1437680 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_2_0025m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)620
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005670Metagenome / Metatranscriptome393Y
F023880Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0100229_14376802F023880N/AMKTDHTYAAQMELTNIPEDSLKQWTNMPPISDELYAELVREFNNERLYFFNDSYNLED*
Ga0100229_14376803F005670N/ANNIKEYNLILRSLDYYDVMMTKRDKEIRDNLEDKLYYNLYNPKDGVAQTNVDISALYDIKTEKDLSDDNEI*

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