Scaffold Ga0100229_1158569

Overview

Basic Information

• Taxon OID: 3300006481
• Scaffold ID: Ga0100229_1158569
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_2_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2070
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001479	Metagenome / Metatranscriptome	687	Y
F013776	Metagenome / Metatranscriptome	268	Y
F030123	Metagenome / Metatranscriptome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0100229_11585693	F030123	GAGG	MSAISTDGMDKWLDDAYPDLDRRKANMIYEIAALIKDDPDTAPVLIEELVEIMFDEQIDHLEDVIVNHFGVEVYPE*
Ga0100229_11585696	F013776	GGAGG	MKEFCFTVTKTGYINVEADSVEDAEARLQENFGHYYVITENGEELSNGWETTGEVELEEECAFNDYEEDF*
Ga0100229_11585699	F001479	N/A	MSKEMLFLCDVYDAWLSKNKLPHRCASEILYGGDTKGRLTQNQSYWLESFISTWDVIAENT*