Scaffold Ga0100229_1128613

Overview

Basic Information

• Taxon OID: 3300006481
• Scaffold ID: Ga0100229_1128613
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_2_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1933
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001026	Metagenome / Metatranscriptome	802	Y
F002137	Metagenome / Metatranscriptome	590	Y
F020546	Metagenome / Metatranscriptome	223	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0100229_11286132	F020546	GGAGG	MTTKTDPNKDFTIKEFYIKVKGDYGKEKIVRVNDSGDKLLSLITDLGWDYQRMSMSGREVFDEIHQLLGTITEDEVYMEI*
Ga0100229_11286135	F001026	AGGAGG	MALHKLVLDDMELTALITHLEGQSEMMCESRLNCSNPSEMPDREEVLLNLVYSKAFTIGWEADKNPKVDFNLIQNQDRIYKYK*
Ga0100229_11286137	F002137	N/A	MKVRELIEALSYYDGDDDITFYFLKNDTLTNCQVEDISFYTESMGVEFTIQDTSEVMEEVDV*