Scaffold Ga0100229_1025678

Overview

Basic Information

• Taxon OID: 3300006481
• Scaffold ID: Ga0100229_1025678
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_2_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4195
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001026	Metagenome / Metatranscriptome	802	Y
F061924	Metagenome / Metatranscriptome	131	N
F095621	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0100229_102567813	F095621	N/A	SKEECITQVEIYYCQRLTEVVDLKMYDEAHSIFEEFSLGDNESYQWFFIQFEDDDTETLSIEDTTNE*
Ga0100229_10256783	F001026	AGGAG	MKHTIELDDLELTALITHLEGQNEIMCESRLNSSNPSETPDREEVLLNLVYEKAFTIGWDAHINPKVDFDLHKNEDRIYQNKLYPQVYGQTK*
Ga0100229_10256785	F061924	N/A	MKFTWRYNGHTTQITLTDTEIVSLVNFIEYWNDVQQADQDLLDNVARKLDQTIINHREKVIKAQSKRPKEEW*