Scaffold Ga0100229_1017116

Overview

Basic Information

• Taxon OID: 3300006481
• Scaffold ID: Ga0100229_1017116
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_2_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12246
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002490	Metagenome / Metatranscriptome	554	Y
F014748	Metagenome / Metatranscriptome	260	N
F020546	Metagenome / Metatranscriptome	223	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0100229_101711617	F020546	GGAGG	MTTKTDPNQNFTINEFYIKVKGDYGKEKTVRVNDMGDKLLSLITDLGWEYQRMSRSGKEVFDEIHQLLGTIKEDEVYMEI*
Ga0100229_101711625	F014748	GGAGG	MEIGDRVQTLHTLEPITGEIVDMYKNYVTIADDDAETVDQLLSFHATDLEVIS*
Ga0100229_101711627	F002490	AGG	MEMKEIKAEIKDYVRDHYKYYGWYPYDVQVGDVLYSYEQYMDILAMTL*