Basic Information | |
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Taxon OID | 3300006480 Open in IMG/M |
Scaffold ID | Ga0100226_1343390 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0075m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4834 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 75 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001479 | Metagenome / Metatranscriptome | 687 | Y |
F014025 | Metagenome / Metatranscriptome | 266 | Y |
F056679 | Metagenome / Metatranscriptome | 137 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0100226_13433902 | F056679 | GGAG | MKLVTHIDVHERLDEDISFQINNALGLWSSKNDADLWEDVRKYMLPYTLKSVEFEKNRPHSLTSYK* |
Ga0100226_13433903 | F001479 | AGGAG | MSKEMLFLCDVYDKYLDENDLPHRSACDILYGENAMALTSNQKYWLESFIATWEVIAEHC |
Ga0100226_13433909 | F014025 | GGAG | MNKLDNYELSTIHYTISYYIDNANLDEDENEWLNLLKEKVDSIMVSQAKYDMECG* |
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