Scaffold Ga0100226_1112856

Overview

Basic Information

• Taxon OID: 3300006480
• Scaffold ID: Ga0100226_1112856
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0075m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 715
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042384	Metagenome	158	Y
F049043	Metagenome	147	Y
F056677	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0100226_11128561	F042384	AGGAG	MGLMPVYYTTTKLSGRKKSSVQNQRLNKEHEKWLRSMGIDKPWKPKSEPLPLARAKKSESYSSVGNGIGNGFVKTTSAISGEYVIGQAYNKGNL
Ga0100226_11128562	F049043	GAGG	MKRNNVEEMHKQLFLLVNLLRKDGHDPLAIAGCMLAGAVQIYQAELGIETTQDLLDQIANGDDEDFDISVDKETIH*
Ga0100226_11128563	F056677	N/A	KLARKPLVVLEDELWQINQLTKLRKDLRNRKKRLEKVIAVKRLALQAVQEKIAREVENEKK*