Basic Information | |
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Taxon OID | 3300006480 Open in IMG/M |
Scaffold ID | Ga0100226_1097480 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0075m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1182 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 75 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001993 | Metagenome / Metatranscriptome | 607 | Y |
F004453 | Metagenome | 437 | Y |
F014388 | Metagenome / Metatranscriptome | 263 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0100226_10974801 | F004453 | N/A | MDMYTQIFIIMLIDFTEYELETIANAMDDYINYDDEKLDTEFLFGGLSVADRVTSINNKIDNVLNWG* |
Ga0100226_10974802 | F014388 | N/A | MSSLHHENILEDCFEVAMESFRINNQLTHEQLDELITISKGTYDAICNNAYKIFQDRCI* |
Ga0100226_10974803 | F001993 | N/A | MGLLSMNAEQLRYKMKNLDSLCPNRSVCNDEQLYDLYSKLRDLIEDTEYNIDIVDLYTMLHNAMEDFEMYE* |
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