Scaffold Ga0100226_1028326

Overview

Basic Information

• Taxon OID: 3300006480
• Scaffold ID: Ga0100226_1028326
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0075m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2534
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020716	Metagenome	222	Y
F027868	Metagenome / Metatranscriptome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0100226_10283264	F027868	AGGA	MDYLALKIPADIDEKITAHTITDQPAPEEGGGYPFKGEKGAYELCGCRMIEIVPAAYTDKKNNHHLEGDLYCDEEGLLNGSAHNWRASQMRYWHMLPRKDQLIPEWRDWCHVVGDAAFVVPATKENLAMMEDILDS*
Ga0100226_10283267	F020716	AGGCGG	MSTARFCKNCGKKYYPKGYYSYPEFRWGTSDEDRLEYARFHSLGCMRDWIDKNKRAFAELVDNISQNVIQETNHNRKD*