Scaffold Ga0100226_1022745

Overview

Basic Information

• Taxon OID: 3300006480
• Scaffold ID: Ga0100226_1022745
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0075m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4432
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001479	Metagenome / Metatranscriptome	687	Y
F001504	Metagenome / Metatranscriptome	681	Y
F014025	Metagenome / Metatranscriptome	266	Y
F020546	Metagenome / Metatranscriptome	223	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0100226_102274514	F001504	N/A	MTYDSEYNYAVQTFLEDDELIKIWNIIEIAMNREGYDVSNAELSMRLYDQELKSNIEYDS
Ga0100226_10227453	F001479	AGGAG	MSKEMLFLCDVYDKWLDENDLPHRSACDILYGENACKLTGNQKYWLESFISTWDVIAEHT
Ga0100226_10227455	F020546	GGAGG	MTTKTDPNQNYTIKEFYIKVKGDYGKEKNVRVNDMGDKLLTLITDLGWEYQRMSRSGQEVFDEIHQLLGTIKEDEVYMEI*
Ga0100226_10227459	F014025	GGA	MKFDNYELSTLHYTLCHYIGSQKTQLDEDEIEWLHTLRKKVDNIMQLQAKYDMECG*