Scaffold Ga0100239_120402

Overview

Basic Information

• Taxon OID: 3300006473
• Scaffold ID: Ga0100239_120402
• Source Dataset Name: Microbial communities from pig manure storage tank from Sherbrooke, QC, Canada, enriched culture C1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Agriculture and Agri-Food Canada
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5135
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Solid Waste → Animal Waste → Unclassified → Unclassified → Manure → Microbial Communities From Manure Storage Tank From Sherbrooke, Qc, Canada

Source Dataset Sampling Location

• Location Name: Sherbrooke, QC, Canada
• Coordinates
  • Lat. (^o): 45.4
  • Long. (^o): -71.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005744	Metagenome / Metatranscriptome	391	Y
F034940	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0100239_12040210	F005744	AGGAG	MDEMFEIIKAGPADAPPEQALYRIQQTYPDGSGGRLNVDWTGLHRLHDLIHDRIAMEGCVCETCSTRGCHRPATWEIECRGAGLRSRLIYTCDKHVPDEAILSPQDEMRRLVEKREE*
Ga0100239_1204028	F034940	GAGG	MGNNCWYYRAQYAGMTKVCMRQSIVERGRIRRFGLCPIPPDSEAWRRCGFAIGQHEIPLMVEDRKIKED*