NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099972_12787030

Scaffold Ga0099972_12787030


Overview

Basic Information
Taxon OID3300006467 Open in IMG/M
Scaffold IDGa0099972_12787030 Open in IMG/M
Source Dataset NameCoastal sediment microbial communities from Rhode Island, USA: Combined Assembly of Gp0121717, Gp0123912, Gp0123935
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJGI facility at Oak Ridge National Laboratory, Brown University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)671
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Candidatus Nitrosopumilus sp. SW(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine → Coastal Sediment Microbial Communities From Rhode Island, Usa

Source Dataset Sampling Location
Location NameRhode Island
CoordinatesLat. (o)40.435Long. (o)-70.483Alt. (m)Depth (m)78
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013764Metagenome268Y

Sequences

Protein IDFamilyRBSSequence
Ga0099972_127870302F013764N/AMNMMRTPSFFFFRTNSKNKQSSSLPPYSKRALVAVTVAIPMAFVLNLSLDSMASFMPIWGVIMINAIVIPSYMTFIIPKASKLLSSWLNSKASGVN*

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