Scaffold Ga0099972_11840151

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0099972_11840151

Scaffold Ga0099972_11840151

Overview

Basic Information
Taxon OID	3300006467 Open in IMG/M
Scaffold ID	Ga0099972_11840151 Open in IMG/M
Source Dataset Name	Coastal sediment microbial communities from Rhode Island, USA: Combined Assembly of Gp0121717, Gp0123912, Gp0123935
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	JGI facility at Oak Ridge National Laboratory, Brown University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	527
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine → Coastal Sediment Microbial Communities From Rhode Island, Usa

Source Dataset Sampling Location
Location Name	Rhode Island
Coordinates	Lat. (^o)	40.435	Long. (^o)	-70.483	Alt. (m)		Depth (m)	78
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F041203	Metagenome	160	Y
F095488	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099972_118401511	F095488	N/A	LMMMYDLEKASKSAPGISLYVSDDPQGSNEVLGPEAPEFPDQDGALVYD*
Ga0099972_118401513	F041203	AGG	MKIKNNDLTHYFLRPHNQLPQGYLDHCKKFFDSLKGQASSGKLQASSIKKQLHKPGRRVKNRFNR

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