Scaffold Ga0099972_11278932

Overview

Basic Information

• Taxon OID: 3300006467
• Scaffold ID: Ga0099972_11278932
• Source Dataset Name: Coastal sediment microbial communities from Rhode Island, USA: Combined Assembly of Gp0121717, Gp0123912, Gp0123935
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: JGI facility at Oak Ridge National Laboratory, Brown University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1884
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine → Coastal Sediment Microbial Communities From Rhode Island, Usa

Source Dataset Sampling Location

• Location Name: Rhode Island
• Coordinates
  • Lat. (^o): 40.435
  • Long. (^o): -70.483
  • Depth (m): 78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007366	Metagenome	352	N
F013089	Metagenome	274	N
F020174	Metagenome	225	Y
F030437	Metagenome / Metatranscriptome	185	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099972_112789321	F013089	N/A	MGQSKIKTIQPNGTYDSQNGLMYKFEIQLESGDSGEVSAKSQDRWSVGDEVEFEVTPSKWGDRMKLTKPGFSPNQSKANNPDIQKRIDASWAIGHAINQESDPEKVLEAAEF
Ga0099972_112789323	F020174	N/A	MKINSYKMDEIKEDVLKYWNWAQDEFKGEDIDRLMFEVDSAVTNLNRYINNEFRRKAMGKTDMRSK*
Ga0099972_112789324	F030437	N/A	MSHSQEENWVTGKTHTRSASAYRTSIWTPVDEDHLKKHPEKYIAEGWKSYCWTKGAEGYDKYFVSKLPKDEFEHLLMVEKKYGYFTLFFHIDED*
Ga0099972_112789326	F007366	N/A	MRGTPLKETKLGQWFKTKAPKVFDLIGEIVPGADALKAIGALIDNTETSDEEKMEAKLLMQEIANADRANARNREIEITKSLGQRDWMQVFVGSAAMIIGIVMVVWAKTGVEDKEIFFHILGFAEGTLVGQVVNYYFGSAKK*