Scaffold Ga0100062_100290

Overview

Basic Information

• Taxon OID: 3300006462
• Scaffold ID: Ga0100062_100290
• Source Dataset Name: Human tongue dorsum microbial communities from NIH, USA - visit 2 of subject 159207311
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28887
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (96.97%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F099453	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0100062_10029011	F081455	AGGAG	METTVNKNIMVNEDTTAFDDFITYALTRKLPEGYDIPPVEEIGMQNVEIIDSAEEAIQQPLANTDSSIAVNFSQMINKPEVEEVKTEVASVPDNGETKVNVFFPKNEHILSNYVDYDSFNKIKESNTETIVRAVRLLNYKMSDQNAAMKFGQFVSEFNSECDPNKRLRYELIRHQGREKDLVVRLSTVVNGTTKYYADIYPDLNKIDIDHHLISSARK*
Ga0100062_10029012	F080166	N/A	MEVTFNNIIKRINTEIKENFHTEYVVGANKLTTNLRYRYRMRLSPRGETVGVIIDWDNYDDLYTIIDEAIDICDPGNKTSPFKRMYSTTGDLLDIKCDSLKVRYLHLDDRFGNRLDLMPFVLIDDHNGTLTEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGSMARYMAITPLLGTNRQNMMR*
Ga0100062_10029015	F099453	AGGAGG	MNRFDIIELAQQTLTFVYDTFNGKVNTLDPYTRLNFVAGYLDTKTNIARTTPYGCIYISLEAFADTVELHGFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYRNEIELQCVKQSCQWILDNIQYIRSLGLVVIPEVYQARLANLTNEVYTPKYPMAIAMGKLEYMLGKKFREFSNNNIEIEYIDRLKTHYAFMVCENRSYINSVNLNDLGERLLNDKQYTVEYLEYGNSKLVIKITQGA*