Scaffold Ga0100062_100009

Overview

Basic Information

• Taxon OID: 3300006462
• Scaffold ID: Ga0100062_100009
• Source Dataset Name: Human tongue dorsum microbial communities from NIH, USA - visit 2 of subject 159207311
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 154476
• Total Scaffold Genes: 144
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 134 (93.06%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F089057	Metagenome	109	N
F095631	Metagenome	105	N
F099452	Metagenome	103	N
F103435	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0100062_10000917	F095631	GGAGG	MASDAVSVNKTLRSYQETVLNTVQNDTLLNANIYDIHQYIENIKKRYVDEDEITLSMGIFGYLGDVNSNALQNAVTMAAEYSNEAIPIKAKFEKNVISHALMLGINKIFAEPATMQAMFVFYEDELVLNTISDTFRFDRDIKIMVGDYEFHLPYDLIIKRIELPTGEYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYMTYHKTIITNNPLESKMLQFEFDNQLAGFDVDVKEYDQPTRKLKPVYNGLNTDGVSNFCNYTYIDSSTIRVMFDNTSYLPTANTEVTVNLYTCQGANGNISYKDSIYFRVKSDKMNYDRLNLLVIPTSDSQYGIDKKSIADLKRLIPKEALARGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPTNIIPTNTIPIEAIRRDFDNISDSNYILTAGNVIKYDGTTNASIAYQASEDELNAARKNEFLYMNPFMCIVNKKPLYVSYYMNIMDVNKLLEFTYVNQDSKVQFIATKMNWYRHYLTDRDTYFGDISIMQNIQSDIGLVHKDDPYDPEKITGVDVKVLAVFYTDEKYQVPYRWAEAEFVNYDQNTYVMDYKFKLNTDNKIDKNIKLKINNVYEVGNATRLSPGYMANNMHMKIFVFAKDVFGYNAGLHKSDHIFTADFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKVKKQDNGQISYIIDRVPVISYDYVNTEERIQDFINNLEKKRIHILDCLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLSEYIKNDIRKYIEDKSRISDIHIPNIITYITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA*
Ga0100062_10000947	F103435	AGG	MKFVFCTEPIYQYYRSYLYADDKDKLDKQLMIEYGDYKDIWDLKQQQDALPENIFVAELTSRDYPRNPWNYVSQLINKLTYQYLIDSPEFETIFSEVLFNQSEAEFYEFYKAIDRFYNGSEVFIVVGNDEYSDMVTQMMCNVIRRTYGIHPQIIYDMDDVNSIRDDIDFSPQGAQLAYLQRAEYLKLEAKRGFEPLQIWYPFDMNTYTNALG*
Ga0100062_10000957	F089057	GGAGG	MTNIIPLIAKKYNRKGDTSGTLKSLVDDLVFIEDTNDSLLFITNIPRETKYSIEEVFNIITSNDKYSEVLSNVLSSLNIDLDYHKLLLNAIDSESYKIISLISDNIPTPDLFLSKNNYGCLTTALGKSYTIFDKVLGMVISQLLHTSSKEDKILSLFMTICIINKDIDKLASLCTGYLAITKDEVLVKDLMNESATMAFQYMSEEDIHDVVDDINSRSVLARYLSRM*
Ga0100062_10000999	F099452	AGG	MDKTYTELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELLLSSVNVFTLYKDIINLDDVSLLTELRHTEWYKDWFTSDKRNSDLIDLSRFNFRVLERFEKEEYLKDAEHYDFEGVSEVDSYDLFDTLREDEDIELFKLAAENILINHGFFNNTDYNLYEVPDEYMSNQEVCLYMCLLNTDNLDFMDKKTFDSTLLYNIVKDRICGSVYFTIFDSLNEDTRTRAR*