Scaffold Ga0082247_10025628

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0082247_10025628

Scaffold Ga0082247_10025628

Overview

Basic Information
Taxon OID	3300006421 Open in IMG/M
Scaffold ID	Ga0082247_10025628 Open in IMG/M
Source Dataset Name	Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten I
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Center for Biotechnology (CeBiTec), Bielefeld Univeristy
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	886
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment → Deep-Sea Sediment Bacterial And Archaeal Communities

Source Dataset Sampling Location
Location Name	Fram Strait
Coordinates	Lat. (^o)	78.153207	Long. (^o)	5.975413	Alt. (m)		Depth (m)	1200
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F087217	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0082247_100256281	F087217	AGGAGG	MFRTLKTMIVTTLLAIVMFIVPNAGWTAGLPEGVSIDVLAEYPSKTVGVEKVLFRKITIKPGASLTLTVPAQSLCQGTKGVLEVTNHGSGQITIHKAGERWETTPGEKVTLANKGTVNHEHLFYTMVVTK*

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