NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0082248_10875336

Scaffold Ga0082248_10875336


Overview

Basic Information
Taxon OID3300006420 Open in IMG/M
Scaffold IDGa0082248_10875336 Open in IMG/M
Source Dataset NameDeep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten IV
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCenter for Biotechnology (CeBiTec), Bielefeld Univeristy
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)502
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment → Deep-Sea Sediment Bacterial And Archaeal Communities

Source Dataset Sampling Location
Location NameFram Strait
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)2500
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010737Metagenome300N
F100046Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0082248_108753361F010737N/AMVTTITRTYDSTPTDKTYFSLTDNMSSSSLGNIQTPQGSQRISRIDVAVDAPDTKGFVLACRLLGSNMSEQNLTLAGSCGDVGDAGGTAQFNMIPTNFSVAGVNNIDLQVAFQFTTGTPTASSLS
Ga0082248_108753362F100046N/AGTNDGRKTLVTAGGIALLGAFARKQFPQLKLGGSKLYFRL*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.