Basic Information | |
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Taxon OID | 3300006414 Open in IMG/M |
Scaffold ID | Ga0099957_1314920 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0500m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1692 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 500 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F004418 | Metagenome / Metatranscriptome | 439 | Y |
F027651 | Metagenome / Metatranscriptome | 194 | Y |
F062152 | Metagenome / Metatranscriptome | 131 | Y |
F105352 | Metagenome | 100 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0099957_13149201 | F027651 | N/A | MKKVNLNKIVESNIKWEAVGLANSLNQNYHNWLDCVTDTKDYNIESDKFGNGFGVFSGSKYWRIEASQNSGCNYIIDQKNSKMYSTAHKENHVWGYVVKKNTENHNRGDILTRNFKVVGNVLTGNKVNLGMPNSHYPNYTDCWA |
Ga0099957_13149202 | F004418 | AGG | MKIRNNKIMNWLKDDWKNNRFRLFCESIGSLCFISIYVLMAWYGDSVSIATIFGIQIVGSTLHIINAYLRNSINLMVLNIIVIAIAVFGIAKMYL* |
Ga0099957_13149204 | F105352 | AGG | MSYCGKIRKDKENSYKLEIPRNQFDRIADAFEHQVIDVNGYDADKDTVIFTVSEKQRLWFEKIAKSKKIKWKGKVKANPYYWITKMFLSHEIEKYLVK* |
Ga0099957_13149205 | F062152 | GAGG | MGPHYMNKLVEHINKLNEETRARGAVGFLTNDPDHWAGYGVYTIGQFQDYLEREYQHNIQKEERRNY* |
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