Basic Information | |
---|---|
Taxon OID | 3300006413 Open in IMG/M |
Scaffold ID | Ga0099963_1039060 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0025m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2095 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 25 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001993 | Metagenome / Metatranscriptome | 607 | Y |
F004764 | Metagenome / Metatranscriptome | 424 | Y |
F014388 | Metagenome / Metatranscriptome | 263 | N |
F023877 | Metagenome / Metatranscriptome | 208 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0099963_10390601 | F001993 | N/A | MNSEQLRYKMKNLDSLLPNRSVCNDEQLYDLYSKLVDLIEQTDYKIDIVDLYTMLHNAMEDFEMYE* |
Ga0099963_10390602 | F014388 | AGGAG | MSSLHHENILEDCFEVAMESFRINNQLTHEQLDELISFSKGTYDAICSYAYKIFQDRCI* |
Ga0099963_10390607 | F004764 | GAGG | MNFSLEQNVDILSAYHVERFTHLRDNEQYQDADAIAQEYICNGEVEHDDYKWLYVNYQFKEAN* |
Ga0099963_10390608 | F023877 | N/A | KQMIKEYVYDHFDNFGFYPYEVEVDGQVYSYGGYWQILEDERFD* |
⦗Top⦘ |