Scaffold Ga0099963_1017724

Overview

Basic Information

• Taxon OID: 3300006413
• Scaffold ID: Ga0099963_1017724
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4484
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001026	Metagenome / Metatranscriptome	802	Y
F001504	Metagenome / Metatranscriptome	681	Y
F007756	Metagenome / Metatranscriptome	345	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099963_10177244	F001504	AGGAG	MTYDSEHYYNVHTFLEDDELHKIWNIIEIAMNREGYDVSNAELSMRLYDSELEENIEHDMENLL*
Ga0099963_10177248	F001026	N/A	MKHTLQLDDLELTALITHLEGQSEIMCESRLNCSNPSEMPDREEVLLNLVYAKAFTVGWEANINPKVDFNLIKNQDRIYKYK*
Ga0099963_10177249	F007756	N/A	MKTVTEKRYFVTTKFEKYGTYTIMARSKEHAIQMWKDGDWNFDDYESDYGEYNEVIDEIEEEVFADTQLSLEGVLA*