Scaffold Ga0099963_1015870

Overview

Basic Information

• Taxon OID: 3300006413
• Scaffold ID: Ga0099963_1015870
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3121
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001026	Metagenome / Metatranscriptome	802	Y
F002137	Metagenome / Metatranscriptome	590	Y
F015105	Metagenome / Metatranscriptome	257	Y
F030123	Metagenome / Metatranscriptome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099963_101587010	F015105	GGAGG	MIDNRESEQTKLEQRKGMLIYEIASLVKDHPDTAPVLIEELVDIMFDEQIDHLEDVIVNHFGVEVYPE*
Ga0099963_10158703	F002137	AGGAG	MRVTNHINKSKMKVKELIEALSYYNGDDNITFYFLKNDTLTNCQVEDISFYTESMGVEFTIQDTSEVMEEVDV*
Ga0099963_10158705	F001026	AGGAGG	MAKHTLELDDLELTALITHLEGQSEMMVESRLNCSNPRELPDREEVLLNLVYAKAFTIGWDAHINPKVDFNLHQNEDRIYKYK*
Ga0099963_10158706	F030123	AGGA	MSAISEDGMDKWLDDAYPSLDKRKANLIYEIASLVKDFPDTAPVLIEELVEVMFDEQIDHIEDVIVNHFGVEVYPE*