Scaffold Ga0099955_1021201

Overview

Basic Information

• Taxon OID: 3300006412
• Scaffold ID: Ga0099955_1021201
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0125m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1489
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 125

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023368	Metagenome / Metatranscriptome	210	Y
F058216	Metagenome	135	Y
F105930	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099955_10212011	F023368	N/A	KYNKSTTKYKDVSNDDNIFKKLDKLYDETNDVQTIRDCESLFSTLAHLSMPSMCCGWVSEEHFNNLLEKYKIDLTPYVKDDERITTSIKSEIADEMFKLVETGKYKKRNLIKVLREKFKDVNAGVIHRLIKKNMDLRILEIDRTYKTKPYVIKGKYYIGG*
Ga0099955_10212012	F105930	AGGAGG	MKRYKVTVPEQELIVEAEDEGDAESQALGLWDWGNVDMDVEEIE*
Ga0099955_10212015	F058216	AGGAGG	MPIRKTVGQLLVENHWSVQRLAVAINITKEDIKKWARLNKRYKKYKK*