Scaffold Ga0099955_1009300

Overview

Basic Information

• Taxon OID: 3300006412
• Scaffold ID: Ga0099955_1009300
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0125m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5706
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Bellamyvirus → unclassified Bellamyvirus → Synechococcus phage S-SM2 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 125

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026396	Metagenome / Metatranscriptome	198	Y
F098025	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099955_10093002	F098025	N/A	MGLFGSKPVYSHKTDEQLWYEISENLTELSRRDEVNYRVRATRDSVKQKLISLGLFEEKKPKKPPKL*
Ga0099955_10093005	F026396	GAGG	MEEKMLREIANDAITPKKRDRKVQNDLYEKKIDDDFYEGLDYDDQMIPSAEF*