Scaffold Ga0075510_11121580

Overview

Basic Information

• Taxon OID: 3300006405
• Scaffold ID: Ga0075510_11121580
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_RNA1 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1055
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045370	Metagenome / Metatranscriptome	153	N
F067121	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075510_111215802	F067121	N/A	LLRKKPTFFEKAKSTATSYGSKAKAKGMDAFGKMQKTKLYKDASNSIGELSAKYKKLPKNYKTGIKVAGATAVVGGAYAAGKSKRKS*
Ga0075510_111215804	F045370	N/A	MNRIFPTSSGTNVSGDLLKKAKQHIKTGKKFINKKVMPSAAKNYKSYVAPTVGLFKGAANIATGVGKLALRNPLLAAGTYVAAKAFNPKGKFAKGKKFHEFGDAGKVLSKGGKKIFYG*