Scaffold Ga0075495_1354538

Overview

Basic Information

• Taxon OID: 3300006399
• Scaffold ID: Ga0075495_1354538
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_RNA2 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2850
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y
F018962	Metagenome / Metatranscriptome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075495_13545382	F004606	N/A	MKTHRIFNKGQNVYCLLASHTNPNILLPVKGKILDSKWDPVNPLYQIRIIKFYDNMRFLKQHFFDMNFRHMFENRARKMILKAEDFKTAKALEDRLNEKDRERFYVVIESVMCTKTKVGLSELFEKVQLYMISKNLKEIRDISSRPFFKGPLSIDSVREFDARYKKGWADKFEKSSLSIDKYLNSLG*
Ga0075495_13545383	F008190	AGGA	MEEHIEFNFIYSNDALRVKTFLGNVPRSIECINYMDIFNKLTKNDFYQYEPSDAVVSSYLMRQLQNAIGRNISTTIFYVLGNLNKETVGGIQTYVESLSDKPITYKIYHSPDITVNGTAELFDDIIEFE*KHIGYLTKDKMYTAF*
Ga0075495_13545384	F018962	N/A	ARNGVIKKVIDDNHGGGREHFTSTDVYESNENDKNQFSYIKRFFFDLCDDLGLEVGSKFDKTVLDINTKWGTHFEPTPKDIEFKIKKLKSELKELEEWKNI*