Scaffold Ga0075495_1018535

Overview

Basic Information

• Taxon OID: 3300006399
• Scaffold ID: Ga0075495_1018535
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_RNA2 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 569
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050676	Metagenome / Metatranscriptome	145	N
F054358	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075495_10185351	F054358	AGGAG	MSSTKTPIRQAEMDHIDHFLETKYDDRKNTLKTEMQDIIDREAEENFEAFKDKLKINTMHKEVYAYYEDHEKFANEMDTILLEKKGKLDNAINTLEDKL
Ga0075495_10185352	F050676	N/A	KTMQTKLPVKSRVADKYQPMLTYYAELIGLCHETVTKTESLKMLDPMGKKTTATSLFIRVCQRMDKSIDAKEIADKLENVSQINKQKEIA*AVLKHL*