Scaffold Ga0079066_1015366

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0079066_1015366

Scaffold Ga0079066_1015366

Overview

Basic Information
Taxon OID	3300006395 Open in IMG/M
Scaffold ID	Ga0079066_1015366 Open in IMG/M
Source Dataset Name	Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Cas_02_SludgeMetaT (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	709
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	Urbana, Illinois, USA
Coordinates	Lat. (^o)	40.1191	Long. (^o)	-88.1952	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F053314	Metagenome / Metatranscriptome	141	N
F067884	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079066_10153661	F053314	N/A	MRTARSTVVVQDNVVVREWRNGVAVRTFQVHNTWGTAGLNMIRDWFAGLSRVPVTHIAWLDAGGVERARDIVTQRVLPGDGSLLIRQYLPSATSANGHTLTTIRAYNAQSGGTRFAEAVFDAAGVAKTTNNQITVEWTHTFADGGT*
Ga0079066_10153662	F067884	N/A	QGAVNRYTVTAVSGDALGGWLEWFSALARQAQKFVLYDEDQVGMLKVVVDTVIVTDSAVEYNWGTVDRKPESRTNKAQTNFSETNWVHA*

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