NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075490_1331541

Scaffold Ga0075490_1331541


Overview

Basic Information
Taxon OID3300006375 Open in IMG/M
Scaffold IDGa0075490_1331541 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_>0.8_RNA2 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)833
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → environmental samples → uncultured virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017318Metagenome / Metatranscriptome241Y

Sequences

Protein IDFamilyRBSSequence
Ga0075490_13315411F017318GAGMLTKSQKKRAVSRRASQNKSPNAIKNPELNQVVKFVRTVEGAFDIITTGLVANVGIFNFSLNDLPSYTEFTALFDLYKIEQIEIEWTPEYTELTDAAPVSNAVNVYFNSAIDPAGNTPASVDDVLQYRSLHSTSITKHHKRTFVPAYLADGILPVSSYISCASPSTNLYGIVYGIPATGVAMTFRSRARFYLSMAQSR*

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