Scaffold Ga0068659_1025560

Overview

Basic Information

• Taxon OID: 3300006363
• Scaffold ID: Ga0068659_1025560
• Source Dataset Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0600_B MetaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1600
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.539
  • Long. (^o): -110.798

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F000855	Metagenome / Metatranscriptome	859	Y
F002978	Metagenome / Metatranscriptome	516	Y
F011940	Metagenome / Metatranscriptome	285	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068659_10255601	F011940	N/A	ALRRAVAPPAARICDLPAPVLADAPELHGMRDAFPDFVLGLCNFFSIASPVLGFVRFPVTLMVIGFAFWTAWRVFRSLS*
Ga0068659_10255602	F000855	GAGG	MDWLEDFWSKVISWLDQLSASIHNNIISWINSLIDIWNGWMDALLHPAQAMPSIPQLRWVVDWLGGIADYTRLMYMLVDYVAYAWIVQQALTAQIGIVIVGLGFRAWLVIRRIVLVS*
Ga0068659_10255604	F000642	GGTGG	MQEISIALALCAVGAAVWYMRRRDAGAGRVRGWLLLYDDVGGWRVLPAVYGDSGIVADGVTYPAALPALRAGRELVWVARCESAALIEHQALERAREAAALASLWRGGGQWLDLMRVLGVVLPAVFAYFTWAQVSALQSLVAQILALVGER*
Ga0068659_10255605	F002978	AGG	VSNLRDWRVTVVPWADRRLWFIQARRGRRVVWGVVYDAADPDSVALARRAIATLRAAGADCSALP