Scaffold Ga0068871_100105335

Overview

Basic Information

• Taxon OID: 3300006358
• Scaffold ID: Ga0068871_100105335
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2366
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: South Gull Lake, Michigan
• Coordinates
  • Lat. (^o): 42.405765
  • Long. (^o): -85.399014

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006453	Metagenome	373	Y
F061884	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068871_1001053351	F006453	AGAAG	MNKRASILHLLFVLILALAFPVLAFGKGKTLYVHLLDGNDSEGDGSYTRPFKSWRVALRHVGSGDTLVAKNGDYRKAGRAGNWGGLGLTLTMADSLKEGDPHQAVPKSVPPEAVGIYRYDATNPLIIRAETKYGVIIDDVRFHLSSGIVIDGFDIFPNPYYEDEAGKKLNRRRDGIHGDSVYEPEDGYNRVKTNDAPGRHTAAWYDRSLWTSFITVRNCKVHYSCPPT
Ga0068871_1001053353	F061884	N/A	LFISGLKPYAKYELQMTGGRANWRGGLFNGVPGGNFIGAANGSGVLYLPFKGQKDGRLRVRMLG*