Scaffold Ga0075021_10543893

Overview

Basic Information

• Taxon OID: 3300006354
• Scaffold ID: Ga0075021_10543893
• Source Dataset Name: Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 738
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: Pennsylvania, USA
• Coordinates
  • Lat. (^o): 41.1289
  • Long. (^o): -78.4195

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000739	Metagenome / Metatranscriptome	913	Y
F011614	Metagenome / Metatranscriptome	289	Y
F018046	Metagenome / Metatranscriptome	237	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075021_105438931	F018046	AGTAGG	MPVVGSSAYNTAGQITALVRSLLNDSQGNLFTDSVLLPYVNSA
Ga0075021_105438932	F000739	GGAG	MQRLEIWLRGVLAAAISGGAGGILTGLAAVGIDPQHFNLQAGLGSTMRIAVAAAAINSIIGVAAYLQKSPLPEESK*
Ga0075021_105438933	F011614	N/A	AYGSPRAWYAQTLEIEGGRNVPALGPYPARGEYEHCFTLEDRHGEFVQLTATAAEHIARAIEWSRKHPRSKSRRAIDDRELRQERNYDNFAYDVLDDAVPAFHRQPFVTVA*