Scaffold Ga0075448_10026970

Overview

Basic Information

• Taxon OID: 3300006352
• Scaffold ID: Ga0075448_10026970
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG108-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1858
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010503	Metagenome	303	Y
F087770	Metagenome	110	N
F089424	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075448_100269703	F089424	AGGAG	MFACIAIKPLNDSTYGCRFNLLGLKGLTRRRKFKSRGIKFQALNSMVALHFFKRTIYLEKKANRTTGRRVRHFAG*
Ga0075448_100269704	F010503	AGGAG	MGTKMDHDKLYKVQTYSFHEAIITVTETCYSRTEIDPPTKPNKWGHVPSPTVHTDGTEHYYKYSHWEEVIAVVPLHFNYEDNLTEADNIKTVLETVDALEKAYASHPDGEISISWTMRRNCINQ*
Ga0075448_100269706	F087770	AGGA	MPPKQEELKSTHTIRRACDFYMRTPKFCVLGVKSQYDYERNLEFACKTSVQGGKFLGNIKLKDLQFSNVTVAYDYWQVKYGVRAANYIATCLSIVLNTA