Scaffold Ga0099953_1269264

Overview

Basic Information

• Taxon OID: 3300006351
• Scaffold ID: Ga0099953_1269264
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0045m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1363
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014026	Metagenome / Metatranscriptome	266	Y
F023880	Metagenome / Metatranscriptome	208	Y
F090509	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099953_12692644	F090509	N/A	MQLLSRREYNLILRSLDKYELYMNNKEKQLSEELQDKLYYNLYNPKDGVAQTTTELPDLNIDLSKLNNVHSMKDYSN*
Ga0099953_12692645	F023880	N/A	MNKEHTYAAQMELTNVPEDSLKQWTNMPPISEELYNELVKEFNNERLYFFNDSYNLED*
Ga0099953_12692646	F014026	GAGG	MNKRATETTLINTLIDSMTMEDFRQYVANDMASFLYYCSESEVVNEFLIKLEHTTDEQFYNKFVKTVVSKWEAV*