Scaffold Ga0099954_1383450

Overview

Basic Information

• Taxon OID: 3300006350
• Scaffold ID: Ga0099954_1383450
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0075m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1734
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001026	Metagenome / Metatranscriptome	802	Y
F013897	Metagenome / Metatranscriptome	267	Y
F025518	Metagenome / Metatranscriptome	201	Y
F056679	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099954_13834501	F025518	GGAG	MSDKLFHKTKTSLSEESKQYLPIVKEFYPHLDDMLTDRIAKYFALYSKGTDKASIRQAINDFEEVFDTELTS*
Ga0099954_13834504	F013897	N/A	MNLTKDQLIELMNTIDYATDNDASYEEYTIIRSGTFDLEPIRDILYNEYRS*
Ga0099954_13834505	F001026	AGGAGG	MMHTLELDDLELTALMTHLQGQSEIMCESRANSSNPRELPDREEVLLNLVYANVFTLAYEADKNPKVDYNIIQNQDRIYKYS*
Ga0099954_13834507	F056679	N/A	MKLVTHIDVHERLDEDISFQINNALGLWSAKNDADLWEDVRKYMLPYTLKSVEFEKNRPHSLTAYK*