Scaffold Ga0099954_1361117

Overview

Basic Information

• Taxon OID: 3300006350
• Scaffold ID: Ga0099954_1361117
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0075m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1077
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020546	Metagenome / Metatranscriptome	223	Y
F023367	Metagenome / Metatranscriptome	210	N
F058219	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099954_13611172	F023367	GGAGG	MVMEESKDTKMKKFIFEEKFISYADVEIYAENEEDARRQFQNGNYQYYDVSDFTDGHELINVREETD*
Ga0099954_13611174	F020546	GGAGG	MTTKTDPNQNYTIKEFYIKVKGDYGKEKIVRVNDSGDKLLSLITDLGWDYQRMSMSGRQVFDEIHQLLGTIPVCEVYMEI*
Ga0099954_13611175	F058219	AGGAG	MSKSKKQLKDNLKYLKKHLDNDKDINQVIEHTKKIGISSAQYFCEEFVFIPDGETPEQTARFHDVEYLDIAEFNYHHWISNKMEDY*