Basic Information | |
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Taxon OID | 3300006350 Open in IMG/M |
Scaffold ID | Ga0099954_1229386 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0075m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3217 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (16.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 75 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001993 | Metagenome / Metatranscriptome | 607 | Y |
F023880 | Metagenome / Metatranscriptome | 208 | Y |
F092196 | Metagenome | 107 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0099954_12293861 | F023880 | N/A | MNKEHTYAAQMELTNVPEDSLKQWTNMPPISEELYQELVKEFNNERKYFFNDSYNLED* |
Ga0099954_122938611 | F092196 | GGAGG | MKTYRVKVKQVYIETMFVEAESEDDAVQLMWSDDCGIADSEYKSAEAEVVSVEAK* |
Ga0099954_12293866 | F001993 | N/A | MGILSMNAEQLRYKMKHLDELCPDRSVTNPEEFHALYSKFSWIIEQTDYKIDIVDCLTALHCAMEDYEMYA* |
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