Scaffold Ga0099954_1185159

Overview

Basic Information

• Taxon OID: 3300006350
• Scaffold ID: Ga0099954_1185159
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0075m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8200
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001918	Metagenome	617	N
F020922	Metagenome / Metatranscriptome	221	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099954_11851591	F020922	GGA	MTLGVFHQVYTRPKATEEAIKSFRQFHPDNPYVLICDGGKSFHRIAKRYDCLYVHEEDNLGYRDHTHESGIYGMTKEEVLEWLRRFRLACTLCNTDHILMMEDDILIRGEIHVPEEWEFAGQAKPGNLLQEEFMIYLTEKYGVEWNVNYYGTGGGSIFNAKTFLENYERVIKIF
Ga0099954_11851593	F001918	GAGG	MKIALCFAGQPRFINLMNFGNLTDGHDVTTYAHFWWDDEYRGDMFAWNSELKYPDDYDPIDHFEQRMKPKQLVWEKYPKFDMSPYKMVSQMEFPLSDEIVRQSIYRQKCQWTSVKKSVDLVDDEFDLVIRMRTDLEFHDRVPLEACKGNGLFMMNGSYQAGAGREYCDWFYCGPHKRVQQFDPLQVFDDFYADGIRHMHDLVIETLRTLQIPHAVLDLKAWMMDRSKIK*