Basic Information | |
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Taxon OID | 3300006350 Open in IMG/M |
Scaffold ID | Ga0099954_1058772 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0075m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2852 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (72.73%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 75 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001504 | Metagenome / Metatranscriptome | 681 | Y |
F007173 | Metagenome / Metatranscriptome | 356 | Y |
F013776 | Metagenome / Metatranscriptome | 268 | Y |
F029129 | Metagenome / Metatranscriptome | 189 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0099954_10587721 | F001504 | N/A | SEYYYAVQTFLEDDELCKIFNIIEIAMNRAGYDISNSELSMRLYDNELEDNIEYDMEHLL |
Ga0099954_10587724 | F029129 | N/A | MKTPTTKKFIIEVTGKQIKVNKFGDKLHSLIDDLGWEYQRMGMSGRETYDEICHLLNMIPEDEVYMEI* |
Ga0099954_10587727 | F007173 | AGGAG | MQTITKAKISRINLMDYIHEDRDLLMGLQDDLSDMLYATGKFSIDLNEIVNEYMPYIPLYLIENEDEIKEVYSDRIDEDDNLFIFDRDRTPNEITLNVEWID* |
Ga0099954_10587729 | F013776 | GGAGG | MKEFSFTVTKTGYINVEADTVEDAEARLQENFGHYYVITETGEELSNGWETTGEVELEEECAFSDYEEVD* |
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