NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099954_1039021

Scaffold Ga0099954_1039021


Overview

Basic Information
Taxon OID3300006350 Open in IMG/M
Scaffold IDGa0099954_1039021 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0075m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2145
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001504Metagenome / Metatranscriptome681Y
F004869Metagenome / Metatranscriptome420Y

Sequences

Protein IDFamilyRBSSequence
Ga0099954_10390214F001504GGAGMTYDTEHYYAVQTFLEDDELCKIWNIIEIAMNREGYDVSNAELSMRLFDSELTENIEHDMEHLL*
Ga0099954_10390217F004869GGAGMSYDTEHYYALHTFLEDDELHEIWNIVEKAMNREGYDVSNSELSLRLYDSELEENIEHDMENLLSSQSEGKDIDYGSKVDALVDSMGVTDKEVSTSHRRKDMDLL*

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