Scaffold Ga0099954_1030364

Overview

Basic Information

• Taxon OID: 3300006350
• Scaffold ID: Ga0099954_1030364
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0075m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5812
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001026	Metagenome / Metatranscriptome	802	Y
F001479	Metagenome / Metatranscriptome	687	Y
F002137	Metagenome / Metatranscriptome	590	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099954_103036413	F001026	AGGAGG	MAKHTLVLDDMELTALITHLEGQSEMMVESRLNCSNPSELPDREEVLLNLVYAKAFTIGWDADKNPKVDFNLIQNQDRIYKYK*
Ga0099954_103036415	F002137	GGAGG	MRVTNHINKSKMKVKELIEALSYYDGDDNITFYFLKNDTLTNCQLEDIGFFSDTMSVELTIQDTSEVQEEVDV*
Ga0099954_103036418	F001479	AGGAG	MSKEMLFLCDVFDKWLDENNLPHRSADDILYGENACKLTGNQTYWLESFISTWEVIAEHT