Scaffold Ga0099954_1024337

Overview

Basic Information

• Taxon OID: 3300006350
• Scaffold ID: Ga0099954_1024337
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0075m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5796
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014026	Metagenome / Metatranscriptome	266	Y
F034959	Metagenome / Metatranscriptome	173	Y
F082798	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099954_102433711	F082798	N/A	MSELSSLKQAQYHLKELEGHIKNNKWYSHLYSHLAAVEGELQRQVETLEGTKVKIMDNSAAGEIPETERLYNVLEEQTNGFFPPDTSYTSLSRVGASQKYEDLLSQGVSPDSIKIVRVK*
Ga0099954_102433713	F034959	AGGAGG	MKIEINKEQLEILKYAILWYECNDKEEERIVDELETKLYNAQEQDLLRSFTNMGGLH*
Ga0099954_10243376	F014026	N/A	MKHNKETYINTLVDSMSMEDFRQYVANDMASFLYYCSESEVVNEFLIKVNHTLDEQFYNKFVKQNKGILL*