Scaffold Ga0099954_1020512

Overview

Basic Information

• Taxon OID: 3300006350
• Scaffold ID: Ga0099954_1020512
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0075m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5821
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (85.19%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001026	Metagenome / Metatranscriptome	802	Y
F013897	Metagenome / Metatranscriptome	267	Y
F015653	Metagenome / Metatranscriptome	253	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099954_10205122	F013897	AGGAG	MNFTKDQLLTLMNTIDFATDNDASYEEYTILSDGSSDLEPIRDILYNEYITKGENS*
Ga0099954_102051221	F015653	GGAG	MIKKFKSKVDGLEFIYQIVDGNLEYKIEGTDWQDFIPEDKRAYSDYEYKEFVSLLEGN*
Ga0099954_10205126	F001026	GAGG	MAKHTLELDDMELTALITHLEGQSEMMVESRLNCSNPSETPDREEVLLNLVYAKAFTIGWDADKDPNNDFDLIKNQDRIYQNKLYPQVYGQTK*