Scaffold Ga0099954_1016785

Overview

Basic Information

• Taxon OID: 3300006350
• Scaffold ID: Ga0099954_1016785
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0075m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4220
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003869	Metagenome / Metatranscriptome	464	Y
F007173	Metagenome / Metatranscriptome	356	Y
F020546	Metagenome / Metatranscriptome	223	Y
F058219	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099954_101678511	F003869	AGGTGG	MAKKQYKRTYHYSIAGMLTDEEVHKIWEIVGNALDRNGFVDADGELSIRVYDETLKKNVRIIQEVN*
Ga0099954_10167854	F058219	GAG	MKISSDKQLKRDLKYLKKHLDDDKEINQVMEHIEKVGIGSAEYFCEEFVFIPDGEEPEQVARLHDPLYFDISEFNYHNWEGN*
Ga0099954_10167855	F020546	GGAGG	MTTKTDPNKDYTIKEFYIKVKGDYGKEKNVRVNDEGDKLLQLITDLGWEYQRMGRSGRQVFDEIHQLLGTIPEGEVYMEI*
Ga0099954_10167858	F007173	GGAG	MTIITKAKISRNNLMEYIHEDRDLLMGLQDDLSDMLYATGKFSITLDEIVNEFMPFFPLYLIENEDEIKQAYPDRFDDDHLFIFDRDKTPTSINLYVEWLD*