Scaffold Ga0099954_1015589

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0099954_1015589

Scaffold Ga0099954_1015589

Overview

Basic Information
Taxon OID	3300006350 Open in IMG/M
Scaffold ID	Ga0099954_1015589 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0075m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6696
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (65.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)		Depth (m)	75
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F078836	Metagenome	116	Y
F084358	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099954_10155893	F084358	N/A	LTKKNLLDISHALLSYRTDSTVIREGGLTDEQKERYKRLTSLIEKVSQLKNVCDCGGKTN
Ga0099954_10155898	F078836	AGGTGG	VNTYEIRASRITYDFYEIKANSLEEAEQRALCRNDKVNTLTTVATPDYCKEVN*

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