Scaffold Ga0099954_1015456

Overview

Basic Information

• Taxon OID: 3300006350
• Scaffold ID: Ga0099954_1015456
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0075m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6115
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (73.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006662	Metagenome / Metatranscriptome	367	Y
F016980	Metagenome	243	Y
F019152	Metagenome	231	N
F053344	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099954_101545610	F006662	AGGAGG	MRTLTAKEYKVISQIYNSTDEIEANLSFEFGLQNDLYYSLFHSYEETK*
Ga0099954_10154562	F016980	AGG	MKYKELLEQFRELTQDQLELETLVFIRDKEKFVSPNSGLYFVTEFDEYDLDLETDQPYFSV*
Ga0099954_10154563	F019152	AGGAG	MEHTKGILLECNLSEEEINTVIEALSRDYVENDAEILEKEYQLQGKLREIISNFYTKVDAQKFTQMQVQSVKGSTL*
Ga0099954_10154567	F053344	AGGAGG	MNRKVFPLELYRRVLKRAKLDEDFYHAIISEYIELLDEHYEIDNLEESVTDWESENPSYFDSLLTTGN*